About PredictProtein

PredictProtein integrates feature prediction for secondary structure, solvent accessibility, transmembrane helices, globular regions, coiled-coil regions, structural switch regions, B-values, disorder regions, intra-residue contacts, protein-protein and protein-DNA binding sites, sub-cellular localization, domain boundaries, beta-barrels, cysteine bonds, metal binding sites and disulphide bridges. Listed below is a comprehensive list of methods and databases currently incorporated into the server.

Citing PredictProtein

If you find PreidctProtein useful please cite the paper along with the specific method you used (see Integrated Methods section below for citing info for specific methods).

BibBase: yachdav, g
generated by bibbase.org
  2014 (1)
PredictProtein–-an open resource for online prediction of protein structural and functional features. Yachdav, G.; Kloppmann, E.; Kajan, L.; Hecht, M.; Goldberg, T.; Hamp, T.; Hönigschmid, P.; Schafferhans, A.; Roos, M.; Bernhofer, M.; and others Nucleic acids research,gku366. 2014.

Supporting Databases

Database Name Description Reference Download
UniRef Used for sequence homology searches by PSI-BLAST abstract http://www.uniprot.org/help/uniref
PDB The PDB archive contains information about experimentally-determined structures of proteins, nucleic acids, and complex assemblies. As a member of the wwPDB, the RCSB PDB curates and annotates PDB data according to agreed upon standards. abstract http://www.rcsb.org/pdb/download/download.do
Pfam A collection of protein families abstract ftp://ftp.sanger.ac.uk/pub/databases/Pfam/releases/
PROSITE Database of biologically significant sites, patterns and profiles abstract ftp://ftp.expasy.org/databases/prosite/